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Sample GSM1381077 Query DataSets for GSM1381077
Status Public on May 02, 2017
Title Uveal melanoma MEL_12
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Uveal melanoma
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.0274766071717704 0.246713755292958
cg00212031 0.370177887596142 0.143750429298324
cg00213748 0.244053194219745 0.316562891552192
cg00214611 0.343856177719847 0.168564794420925
cg00455876 0.148076374126575 0.00769692216900553
cg01707559 0.380498515391563 0
cg02004872 0.41912967163719 0
cg02011394 0.469069733880525 0.557753097266553
cg02050847 0.391620330001914 0.0645571026061053
cg02233190 0.13155101716347 0.00103645367511696
cg02494853 0.0229843458170999 0
cg02839557 0.263110776931819 0.533079894503109
cg02842889 0.368898467841898 0.182669763618004
cg03052502 0.228572377483416 0.323987068042953
cg03155755 0.436673210187497 0.0231667767331299
cg03244189 0.199700418202132 0
cg03443143 0.197487170390225 0.0760725164831357
cg03683899 0.205011052089185 0.113719256077697
cg03695421 0.257130859962653 0.000235523772370128
cg03706273 0.011731045199302 0

Total number of rows: 485512

Table truncated, full table size 14783 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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