GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1381076 Query DataSets for GSM1381076
Status Public on May 02, 2017
Title Uveal melanoma MEL_11
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Uveal melanoma
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.211720901231886 0.271572633421406
cg00212031 0.493854854115048 0.17884906217419
cg00213748 0.161204001294366 0.0478778449823305
cg00214611 0.451783083171171 0.52851477058596
cg00455876 0.297089922232944 7.66053886991358e-15
cg01707559 0.31450148820215 0
cg02004872 0.377464320906841 0
cg02011394 0.0836660209614161 0.481659904680075
cg02050847 0 0.84232791742139
cg02233190 0.0904808383306676 0.000715060666781064
cg02494853 0.0182418625421655 0
cg02839557 0.15770329003875 0.721607827248955
cg02842889 0.0781699712727417 0.868438779845363
cg03052502 0.314995031937101 0.5
cg03155755 0.493203479989449 0.000219440573843488
cg03244189 0.279380355310838 7.13929717011119e-07
cg03443143 0.466357551974156 0.0870414402287196
cg03683899 0.162792395259662 0.433046716095183
cg03695421 0.169024176833564 1.46680708246194e-07
cg03706273 0.0186227901882799 0

Total number of rows: 485512

Table truncated, full table size 14775 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap