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Sample GSM1381073 Query DataSets for GSM1381073
Status Public on May 02, 2017
Title Normal iris IRIS_9
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: neuroretina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.206186393012818 0.651575155883008
cg00212031 0.352900177903928 0.621024462506988
cg00213748 0.238435705674239 0.231890077041181
cg00214611 0.320304533853936 0.488403233610016
cg00455876 0.121709645729147 0.000174469875793837
cg01707559 0.298381183760762 0
cg02004872 0.196743919285934 0
cg02011394 0.219814851122874 0.875192692627531
cg02050847 0.0896855158463103 0.595179641904103
cg02233190 0.0328011102416327 0.0103739787943246
cg02494853 0.022605647410383 0
cg02839557 0 0.755510763816638
cg02842889 0.156998472468835 0.667710969305749
cg03052502 0.104323522655372 0.288354166745076
cg03155755 0.446121829796239 0.00483395476723858
cg03244189 0.234382580641213 0
cg03443143 0.44217973218293 0.0148281306457576
cg03683899 0.184048222665904 0.176853011127983
cg03695421 0.12545997546835 8.66116967035424e-09
cg03706273 0.0174861718770635 0

Total number of rows: 485512

Table truncated, full table size 14760 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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