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Sample GSM1381064 Query DataSets for GSM1381064
Status Public on May 02, 2017
Title Normal iris IRIS_11
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: neuroretina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.346609412098927 0.302539832447784
cg00212031 0.175700014074448 0.668643554513593
cg00213748 0.0584984859199372 0.648847727943968
cg00214611 0.387445355906303 0.464170585690757
cg00455876 0.161445480040302 1.94099254758884e-05
cg01707559 0.25723215501308 0
cg02004872 0.146491733512882 4.10782519111308e-15
cg02011394 0.346030976020009 0.291644860413332
cg02050847 0.273157615196209 0.313730243310617
cg02233190 0.258092042736445 0.0165691476382809
cg02494853 0.0155907680789284 0
cg02839557 0.298430269668118 0.70370826298667
cg02842889 0 0.985961460353514
cg03052502 0.252521112446359 0.692735700415804
cg03155755 0.630021843143898 0.00768227734195981
cg03244189 0.208201343236893 0
cg03443143 0.466340719683279 0.0851150944466418
cg03683899 0.203259708609742 0.60063474655221
cg03695421 0.169109331811576 2.59539278957277e-06
cg03706273 0.0108311871724608 0

Total number of rows: 485512

Table truncated, full table size 14777 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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