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Sample GSM1381063 Query DataSets for GSM1381063
Status Public on May 02, 2017
Title Normal iris IRIS_10
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: neuroretina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.147021352404961 0.382174899910087
cg00212031 0.186051546368796 0.601649131129673
cg00213748 0.205817852234196 0.170841630990539
cg00214611 0 0.95182447058307
cg00455876 0.218333499858677 0.000667111581389102
cg01707559 0.19279841764464 0
cg02004872 0.147910729538982 0
cg02011394 0.135362161805724 0.376826764511881
cg02050847 0.0559949631047675 0.781973687553236
cg02233190 0.185502453710601 0.00598070013335394
cg02494853 0.0232199666997764 0
cg02839557 0.261467333602101 0.624950764781056
cg02842889 0.145167295823026 0.573260764902174
cg03052502 0.204177833389445 0.473857901423108
cg03155755 0.223622667053639 0.257500346747487
cg03244189 0.21313646494891 8.88178419700125e-16
cg03443143 0 0.434889690179957
cg03683899 0.0266785517878801 0.576407598713279
cg03695421 0.00900580186919296 0.000142038914084375
cg03706273 0.0205315695330313 0

Total number of rows: 485512

Table truncated, full table size 14768 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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