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Sample GSM1381053 Query DataSets for GSM1381053
Status Public on May 02, 2017
Title Fibrovascular membranes from diabetic retinopathy FVM_7
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: diabetic retinopathy
tissue: eye fibrovascular membranes
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0 0.931485402148735
cg00212031 0 0.980386400730318
cg00213748 0.503962384234094 0.125133694585171
cg00214611 0.175118263576352 0.813025721663575
cg00455876 0.0996180386552999 0.000187981584419794
cg01707559 0.220384441453583 0
cg02004872 0.329892765847138 0.00429384115346276
cg02011394 0 0.945412857719229
cg02050847 0 0.689180863961045
cg02233190 0.187854740129468 0.000899428633129751
cg02494853 0.0303858191706116 0
cg02839557 0 0.916151271673824
cg02842889 0.629853538712172 0.532778019386579
cg03052502 0.439311949632224 0.685407421682533
cg03155755 0.463872338418781 0.0276719256031029
cg03244189 0.333577515638049 1.73731679931066e-07
cg03443143 0.201991416293125 0.100272654214445
cg03683899 0.11835789495297 0.433046716095183
cg03695421 0.241122349836149 0.00113790084123977
cg03706273 0.0337203946934148 0

Total number of rows: 485512

Table truncated, full table size 14817 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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