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Sample GSM1381052 Query DataSets for GSM1381052
Status Public on May 02, 2017
Title Fibrovascular membranes from diabetic retinopathy FVM_6
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: diabetic retinopathy
tissue: eye fibrovascular membranes
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.290115313227612 0.435057304071534
cg00212031 0.258748692003399 0.37957898577523
cg00213748 0.28508338120901 0.269880839692672
cg00214611 0.2545576954742 0.726730308164292
cg00455876 0.129575315219563 2.28261264334506e-08
cg01707559 0.263381037812469 0
cg02004872 0.0899807993872356 2.77883830834824e-07
cg02011394 0.152298307434705 0.560916529431433
cg02050847 0.0183829756531214 0.508408217454647
cg02233190 0.104151206065327 1.00853700519821e-05
cg02494853 0.0295983457924011 0
cg02839557 0 0.869525570049087
cg02842889 0.307737054582268 0.487388841014878
cg03052502 0 0.906302202212887
cg03155755 0.305203675584011 0.0691920008106865
cg03244189 0.318099488772876 1.70530256582424e-13
cg03443143 0.260372088081115 0.387382539683014
cg03683899 0.063317216866302 0.332835950691197
cg03695421 0.151225418401998 0.000798631872440003
cg03706273 0.0241515255089039 0

Total number of rows: 485512

Table truncated, full table size 14798 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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