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Sample GSM1381048 Query DataSets for GSM1381048
Status Public on May 02, 2017
Title Fibrovascular membranes from diabetic retinopathy FVM_2
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: diabetic retinopathy
tissue: eye fibrovascular membranes
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.342261851292849 0.639949276910843
cg00212031 0 0.839073770960235
cg00213748 0.376601127271328 0.321426906992538
cg00214611 0 0.885209069710102
cg00455876 0.103383848907455 6.52197600962134e-05
cg01707559 0.335334208964908 0
cg02004872 0.176976523033251 3.30349814170461e-09
cg02011394 0.151790969662738 0.753337403125839
cg02050847 0 0.59003718505266
cg02233190 0.105677740336142 0.00426279337838353
cg02494853 0.0238881300277481 0
cg02839557 0.178360037895106 0.674788085992616
cg02842889 0.531967892127429 0.5
cg03052502 0.204902498924577 0.881071235309265
cg03155755 0.602132415160602 0.00104420023894436
cg03244189 0.465942402061738 1.37920508347378e-08
cg03443143 0 0.512611158985122
cg03683899 0 0.627257586048366
cg03695421 0.213587339088366 0.00613908709342037
cg03706273 0.0137502035503288 0

Total number of rows: 485512

Table truncated, full table size 14796 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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