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Sample GSM1381047 Query DataSets for GSM1381047
Status Public on May 02, 2017
Title Fibrovascular membranes from diabetic retinopathy FVM_1
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: diabetic retinopathy
tissue: eye fibrovascular membranes
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.371887009049162 0.913393561177765
cg00212031 0.364835986806711 0.947531060916613
cg00213748 0.3464958458085 0.804024458636149
cg00214611 0.490410525214537 0.311042650551768
cg00455876 0.0180092432871299 0.0929111100799662
cg01707559 0.206135578759341 0
cg02004872 0.15315126671289 3.99680288865056e-15
cg02011394 0.150406433741222 0.720286872898524
cg02050847 0.264372408636449 0.23173587339436
cg02233190 0.134160527729283 0.0193453768468862
cg02494853 0.0193851508030031 0
cg02839557 0.27973148990083 0.129559700509307
cg02842889 0.0502970339609595 0.91549233580992
cg03052502 0.0736725138793067 0.948906574615002
cg03155755 0.393049097322511 0.0094436808724786
cg03244189 0.281523295344034 6.38145092324294e-12
cg03443143 0.098481829932471 0.288506880727441
cg03683899 0.0727725351870398 0.0227494986267733
cg03695421 0.0572154857903723 2.01636942726013e-05
cg03706273 0.0190000077482231 0

Total number of rows: 485512

Table truncated, full table size 14815 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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