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Sample GSM1381040 Query DataSets for GSM1381040
Status Public on May 02, 2017
Title Neuroretina from non- proliferative diabetic retinopathy DBT_406
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: non-proliferative diabetic retinopathy
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.253416287425023 0.622215019037314
cg00212031 0.268697919506931 0.774069661202378
cg00213748 0 0.329601724457223
cg00214611 0.153635612460972 0.911328548863068
cg00455876 0.135836183404453 0.149709973993369
cg01707559 0.212449549884676 0
cg02004872 0.0155563590151936 0.00897011584459284
cg02011394 0.230029829588548 0.796770882178528
cg02050847 0 0.750000320725593
cg02233190 0.0233939326147277 0.502446192686676
cg02494853 0.00794056970975267 0
cg02839557 0 0.961138451209705
cg02842889 0.253438094507152 0.960256977728886
cg03052502 0 0.824824912805499
cg03155755 0.246714618206293 0.427950809996228
cg03244189 0.204645447403063 0.0534107096772235
cg03443143 0.104441392132288 0.837882940544316
cg03683899 0.0386027873397239 0.937353885082728
cg03695421 0.212608152329134 0.0010415181693646
cg03706273 0 0

Total number of rows: 485512

Table truncated, full table size 14711 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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