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Sample GSM1381038 Query DataSets for GSM1381038
Status Public on May 02, 2017
Title Neuroretina from non- proliferative diabetic retinopathy DBT_251
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: non-proliferative diabetic retinopathy
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0 0.87315779360659
cg00212031 0 0.774069661202378
cg00213748 0 0.754104097194281
cg00214611 0.273222007724045 0.737474188659454
cg00455876 0.0717795354992271 0.000254265945630383
cg01707559 0.171017233586378 0
cg02004872 0.0439545163416677 0
cg02011394 0.287162378486749 0.707047925440713
cg02050847 0 0.618856078456254
cg02233190 0.069386801632195 0.000508944684973311
cg02494853 0.00984301103390282 0
cg02839557 0 0.95157142867927
cg02842889 0.298435208617467 0.756582413324323
cg03052502 0.407131749690066 0.777949844651551
cg03155755 0.150149535268978 0.18888127150636
cg03244189 0.230105414493352 0
cg03443143 0.273485932264838 0.0337067230429885
cg03683899 0.130188836687401 0.249999679274407
cg03695421 0.163770456447246 0.00134794553068474
cg03706273 0.00889893090836525 0

Total number of rows: 485512

Table truncated, full table size 14780 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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