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Sample GSM1381036 Query DataSets for GSM1381036
Status Public on May 02, 2017
Title Normal neuroretina C_434
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: neuroretina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE C_434_pval
cg00050873 0.591044602318367 0.677777771795054
cg00212031 0.488464077503214 0.628684227959774
cg00213748 0.686627147990265 0.431302082199767
cg00214611 0.451024854532529 0.867316909559825
cg00455876 0.598801201972887 0.772012158468405
cg01707559 0.237193788006857 0
cg02004872 0.11252511419924 4.19886347913234e-12
cg02011394 0.660371857235848 0.747171673549038
cg02050847 0.586839320075761 0.698095357994711
cg02233190 0.170820602767372 0.00563698404030322
cg02494853 0.00948281706515047 0
cg02839557 0.222617333840984 0.878404206574691
cg02842889 0.317178444786308 0.594324777005547
cg03052502 0.406403743672322 0.957036807105819
cg03155755 0.353299181853672 0.633705198368885
cg03244189 0.321343432128721 2.15145357085333e-09
cg03443143 0.412822358612934 0.812591845318295
cg03683899 0.473905935865632 0.69227372115125
cg03695421 0.141317678239373 0.0158506001844648
cg03706273 0.0294378416552771 0

Total number of rows: 485512

Table truncated, full table size 14885 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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