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Sample GSM1381034 Query DataSets for GSM1381034
Status Public on May 02, 2017
Title Normal neuroretina C_416
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: neuroretina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE C_416_pval
cg00050873 0.252681787566012 0.274013803231605
cg00212031 0.264315656172888 0.779154554814542
cg00213748 0.239917203297717 0.647804965340143
cg00214611 0.132859860403481 0.981060739834293
cg00455876 0.189132596037777 1.80393334853202e-05
cg01707559 0.161675149612409 0
cg02004872 0.251090357447071 1.19085647343198e-07
cg02011394 0.147282199198014 0.643884755611389
cg02050847 0.0627186674324792 0.67507988796197
cg02233190 0.100825959952899 0.00271700303239752
cg02494853 0.0158340479955255 0
cg02839557 0.162640960800558 0.620056288592407
cg02842889 0.567148770471333 0.304958573307261
cg03052502 0.162530804511435 0.972449762324365
cg03155755 0.321555003209327 0.416530111792131
cg03244189 0.380142862648445 5.25264887141219e-09
cg03443143 0.517965442883012 0.208540245049007
cg03683899 0.0283799000099307 0.400159594211978
cg03695421 0.208993382563648 1.2104372489774e-05
cg03706273 0.0119539187630356 0

Total number of rows: 485512

Table truncated, full table size 14784 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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