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Sample GSM1381033 Query DataSets for GSM1381033
Status Public on May 02, 2017
Title Normal neuroretina C_410
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: neuroretina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE C_410_pval
cg00050873 0.378879285530052 0.754267492912623
cg00212031 0 0.960256977728886
cg00213748 0.259536761105472 0.462384306664962
cg00214611 0 0.897608635983341
cg00455876 0.0376774307591766 0.0572473911654006
cg01707559 0.412621692780874 0
cg02004872 0.0898817119852106 2.39842212756969e-09
cg02011394 0.179603999612288 0.794711519313361
cg02050847 0 0.305358718503499
cg02233190 0.102266520955829 0.00010117585513314
cg02494853 0.0101646958258102 0
cg02839557 0.476612424774232 0.165707744930728
cg02842889 0.396365026409298 0.615125616993716
cg03052502 0 0.758495246421054
cg03155755 0.303099831091946 0.213045343317751
cg03244189 0.360747531400653 3.01015308235009e-08
cg03443143 0.151798076861175 0.155832115597376
cg03683899 0.315888313570269 0.445591640453353
cg03695421 0.228658083387774 7.06205663281168e-07
cg03706273 0.00355163692363052 0

Total number of rows: 485512

Table truncated, full table size 14805 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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