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Sample GSM1381032 Query DataSets for GSM1381032
Status Public on May 02, 2017
Title Normal neuroretina C_389
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: neuroretina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE C_389_pval
cg00050873 0.655826923922326 0.102994793009062
cg00212031 0 0.832366270973215
cg00213748 0.28364064136843 0.49519506471632
cg00214611 0.347620025316737 0.761341426483671
cg00455876 0.250019499802789 3.18367097321692e-05
cg01707559 0.228448828106406 0
cg02004872 0.170822959984486 1.12852484024373e-08
cg02011394 0.435422701329716 0.349961914579928
cg02050847 0 0.843591140702589
cg02233190 0.0475621658366053 0.00140850805452231
cg02494853 0.0119048579102183 0
cg02839557 0 0.772395061168308
cg02842889 0.064352868595154 0.93634935915475
cg03052502 0.537714376451122 0.170671820958474
cg03155755 0.723813912119546 0.054587142280771
cg03244189 0.252804820918234 9.17803321121013e-08
cg03443143 0.559179558052912 0.0867527370538316
cg03683899 0.0943234538425633 0.462575658064127
cg03695421 0.00236747788570573 0.0293133053185839
cg03706273 0.00743545665053855 0

Total number of rows: 485512

Table truncated, full table size 14809 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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