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Sample GSM1381030 Query DataSets for GSM1381030
Status Public on May 02, 2017
Title Normal neuroretina C_325
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: neuroretina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE C_325_pval
cg00050873 0.412604115739828 0.189004352464744
cg00212031 0 0.954123947586875
cg00213748 0.375132945952668 0.326477626261487
cg00214611 0 0.959541737010775
cg00455876 0.261100621805716 0.551782011427471
cg01707559 0.163361395285922 8.24882717687103e-10
cg02004872 0.106346991074271 0.000543635483955973
cg02011394 0.549734562476871 0.640917279822161
cg02050847 0 0.961932933079693
cg02233190 0.16065983105051 0.000316182451204017
cg02494853 0.0270029682682744 0
cg02839557 0 0.987339478919812
cg02842889 0.551878040763868 0.726718080104801
cg03052502 0.508320353494686 0.0695505953565803
cg03155755 0 0.935815168530014
cg03244189 0.365143529390491 9.00374121926006e-08
cg03443143 0.484197567659951 0.390475656916742
cg03683899 0.0505938303660437 0.502419795249369
cg03695421 0.292150514387714 0.00871046714050261
cg03706273 0.0077467962308088 0

Total number of rows: 485512

Table truncated, full table size 14828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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