GEO help: Mouse over screen elements for information.
Status
Public on Oct 02, 2014
Title
patient BH003, low responder, female, day4, hour 8, recovery
Sample type
RNA
Source name
blood sample from patient BH003, low responder, female, day4, hour 8, recovery
Organism
Homo sapiens Characteristics
patient: BH003
Extracted molecule
total RNA
Extraction protocol
PAXgene protocol was used to extract total RNA
Label
biotin
Label protocol
RT/IVT protocol and reagents provided by Affymetrix
Hybridization protocol
Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol
Affymetrix GeneChip Scanner 3000
Description
blood sample from patient BH003, lowresponder, female, day4, hour 8, recovery
Data processing
Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
Submission date
Apr 21, 2014
Last update date
Oct 03, 2014
Contact name
Keith Shockley
Organization name
NIEHS
Street address
111 TW Alexander Drive
City
RTP
State/province
NC
ZIP/Postal code
27709
Country
USA
Platform ID
GPL10379 Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation
Data table header descriptions ID_REF VALUE RMA expression measures from R/affy package
Data table ID_REF VALUE 100121619_TGI_at
5.866611
100121620_TGI_at
7.690729
100121621_TGI_at
5.818778
100121622_TGI_at
7.493691
100121623_TGI_at
8.806554
100121624_TGI_at
7.436247
100121625_TGI_at
8.064574
100121626_TGI_at
3.943031
100121627_TGI_at
5.23326
100121628_TGI_at
3.720715
100121629_TGI_at
9.823406
100121630_TGI_at
5.796329
100121631_TGI_at
4.429323
100121632_TGI_at
8.393753
100121633_TGI_at
8.730686
100121634_TGI_at
4.996737
100121635_TGI_at
8.47273
100121636_TGI_at
5.920151
100121637_TGI_at
6.163697
100121638_TGI_at
5.093242
52378 1335 Kbytes .Supplementary file Size Download File type/resource GSM1371803__52070900797045031010407111221871_1_1.CEL.gz
4.8 Mb
(ftp) (http) CEL
Processed data included within Sample table
