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Sample GSM1371789 Query DataSets for GSM1371789
Status Public on Oct 02, 2014
Title patient BH007, high responder, male, day4, hour 4, recovery
Sample type RNA
 
Source name blood sample from patient BH007, high responder, male, day4, hour 4, recovery
Organism Homo sapiens
Characteristics patient: BH007
responder: high
Sex: male
day: 4
hour: 4
biological group: recovery
Extracted molecule total RNA
Extraction protocol PAXgene protocol was used to extract total RNA
Label biotin
Label protocol RT/IVT protocol and reagents provided by Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol Affymetrix GeneChip Scanner 3000
Description blood sample from patient BH007, highresponder, male, day4, hour 4, recovery
Data processing Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
 
Submission date Apr 21, 2014
Last update date Oct 03, 2014
Contact name Keith Shockley
Organization name NIEHS
Street address 111 TW Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL10379
Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation

Data table header descriptions
ID_REF
VALUE RMA expression measures from R/affy package

Data table
ID_REF VALUE
100121619_TGI_at 6.34234
100121620_TGI_at 7.421342
100121621_TGI_at 6.708324
100121622_TGI_at 7.208037
100121623_TGI_at 9.123225
100121624_TGI_at 7.749829
100121625_TGI_at 8.336387
100121626_TGI_at 3.744185
100121627_TGI_at 5.777714
100121628_TGI_at 4.155213
100121629_TGI_at 9.726846
100121630_TGI_at 5.845108
100121631_TGI_at 4.154622
100121632_TGI_at 7.749828
100121633_TGI_at 9.535631
100121634_TGI_at 3.594457
100121635_TGI_at 8.941525
100121636_TGI_at 5.493095
100121637_TGI_at 6.136063
100121638_TGI_at 5.303255

Total number of rows: 52378

Table truncated, full table size 1335 Kbytes.




Supplementary file Size Download File type/resource
GSM1371789__52070900797044031010407111221845_1_1.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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