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Sample GSM1371777 Query DataSets for GSM1371777
Status Public on Oct 02, 2014
Title patient BH003, low responder, female, day1, hour16, baseline
Sample type RNA
 
Source name blood sample from patient BH003, low responder, female, day1, hour16, baseline
Organism Homo sapiens
Characteristics patient: BH003
responder: low
Sex: female
day: 1
hour: 16
biological group: baseline
Extracted molecule total RNA
Extraction protocol PAXgene protocol was used to extract total RNA
Label biotin
Label protocol RT/IVT protocol and reagents provided by Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol Affymetrix GeneChip Scanner 3000
Description blood sample from patient BH003, lowresponder, female, day1, hour16, baseline
Data processing Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
 
Submission date Apr 21, 2014
Last update date Oct 03, 2014
Contact name Keith Shockley
Organization name NIEHS
Street address 111 TW Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL10379
Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation

Data table header descriptions
ID_REF
VALUE RMA expression measures from R/affy package

Data table
ID_REF VALUE
100121619_TGI_at 6.685758
100121620_TGI_at 6.882123
100121621_TGI_at 6.095186
100121622_TGI_at 7.675276
100121623_TGI_at 9.142636
100121624_TGI_at 7.07346
100121625_TGI_at 8.164283
100121626_TGI_at 3.932702
100121627_TGI_at 5.525659
100121628_TGI_at 4.295756
100121629_TGI_at 9.955828
100121630_TGI_at 5.772437
100121631_TGI_at 4.159567
100121632_TGI_at 7.990157
100121633_TGI_at 9.13294
100121634_TGI_at 4.058516
100121635_TGI_at 8.660612
100121636_TGI_at 6.010758
100121637_TGI_at 6.229353
100121638_TGI_at 5.248378

Total number of rows: 52378

Table truncated, full table size 1335 Kbytes.




Supplementary file Size Download File type/resource
GSM1371777__52070900797044031010407111221806_1_1.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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