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Status
Public on Oct 02, 2014
Title
patient BH006, low responder, male, day2, hour 0, baseline
Sample type
RNA
Source name
blood sample from patient BH006, low responder, male, day2, hour 0, baseline
Organism
Homo sapiens Characteristics
patient: BH006
Extracted molecule
total RNA
Extraction protocol
PAXgene protocol was used to extract total RNA
Label
biotin
Label protocol
RT/IVT protocol and reagents provided by Affymetrix
Hybridization protocol
Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol
Affymetrix GeneChip Scanner 3000
Description
blood sample from patient BH006, lowresponder, male, day2, hour 0, baseline
Data processing
Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
Submission date
Apr 21, 2014
Last update date
Oct 03, 2014
Contact name
Keith Shockley
Organization name
NIEHS
Street address
111 TW Alexander Drive
City
RTP
State/province
NC
ZIP/Postal code
27709
Country
USA
Platform ID
GPL10379 Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation
Data table header descriptions ID_REF VALUE RMA expression measures from R/affy package
Data table ID_REF VALUE 100121619_TGI_at
6.42177
100121620_TGI_at
7.443823
100121621_TGI_at
5.716858
100121622_TGI_at
7.31453
100121623_TGI_at
8.998301
100121624_TGI_at
7.294394
100121625_TGI_at
8.291577
100121626_TGI_at
4.085185
100121627_TGI_at
5.688059
100121628_TGI_at
3.621424
100121629_TGI_at
9.618613
100121630_TGI_at
5.888918
100121631_TGI_at
4.500522
100121632_TGI_at
7.904901
100121633_TGI_at
8.941617
100121634_TGI_at
4.589197
100121635_TGI_at
8.602758
100121636_TGI_at
5.769675
100121637_TGI_at
6.299392
100121638_TGI_at
5.751188
52378 1335 Kbytes .Supplementary file Size Download File type/resource GSM1371754__52070900797043031010407111221762_1_1.CEL.gz
4.8 Mb
(ftp) (http) CEL
Processed data included within Sample table
