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Sample GSM1371752 Query DataSets for GSM1371752
Status Public on Oct 02, 2014
Title patient BH008, low responder, female, day2, hour12, baseline
Sample type RNA
 
Source name blood sample from patient BH008, low responder, female, day2, hour12, baseline
Organism Homo sapiens
Characteristics patient: BH008
responder: low
Sex: female
day: 2
hour: 12
biological group: baseline
Extracted molecule total RNA
Extraction protocol PAXgene protocol was used to extract total RNA
Label biotin
Label protocol RT/IVT protocol and reagents provided by Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol Affymetrix GeneChip Scanner 3000
Description blood sample from patient BH008, lowresponder, female, day2, hour12, baseline
Data processing Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
 
Submission date Apr 21, 2014
Last update date Oct 03, 2014
Contact name Keith Shockley
Organization name NIEHS
Street address 111 TW Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL10379
Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation

Data table header descriptions
ID_REF
VALUE RMA expression measures from R/affy package

Data table
ID_REF VALUE
100121619_TGI_at 6.2581
100121620_TGI_at 7.550371
100121621_TGI_at 6.900317
100121622_TGI_at 7.286746
100121623_TGI_at 8.944062
100121624_TGI_at 7.491578
100121625_TGI_at 7.946709
100121626_TGI_at 4.27633
100121627_TGI_at 5.294133
100121628_TGI_at 4.638542
100121629_TGI_at 9.842042
100121630_TGI_at 6.444714
100121631_TGI_at 4.630253
100121632_TGI_at 7.987519
100121633_TGI_at 9.836461
100121634_TGI_at 4.11665
100121635_TGI_at 8.686985
100121636_TGI_at 5.589898
100121637_TGI_at 6.379295
100121638_TGI_at 5.597088

Total number of rows: 52378

Table truncated, full table size 1335 Kbytes.




Supplementary file Size Download File type/resource
GSM1371752__52070900797043031010407111221760_1_1.CEL.gz 5.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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