NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1371740 Query DataSets for GSM1371740
Status Public on Oct 02, 2014
Title patient BH006, low responder, male, day3, hour16, sleepdep
Sample type RNA
 
Source name blood sample from patient BH006, low responder, male, day3, hour16, sleepdep
Organism Homo sapiens
Characteristics patient: BH006
responder: low
Sex: male
day: 3
hour: 16
biological group: sleep deprivation
Extracted molecule total RNA
Extraction protocol PAXgene protocol was used to extract total RNA
Label biotin
Label protocol RT/IVT protocol and reagents provided by Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol Affymetrix GeneChip Scanner 3000
Description blood sample from patient BH006, lowresponder, male, day3, hour16, sleepdep
Data processing Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
 
Submission date Apr 21, 2014
Last update date Oct 03, 2014
Contact name Keith Shockley
Organization name NIEHS
Street address 111 TW Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL10379
Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation

Data table header descriptions
ID_REF
VALUE RMA expression measures from R/affy package

Data table
ID_REF VALUE
100121619_TGI_at 6.07668
100121620_TGI_at 6.838626
100121621_TGI_at 6.153253
100121622_TGI_at 7.002615
100121623_TGI_at 9.307337
100121624_TGI_at 7.625505
100121625_TGI_at 8.173816
100121626_TGI_at 4.098981
100121627_TGI_at 5.593403
100121628_TGI_at 4.363651
100121629_TGI_at 9.301666
100121630_TGI_at 6.123775
100121631_TGI_at 4.603606
100121632_TGI_at 7.872683
100121633_TGI_at 9.328244
100121634_TGI_at 3.469785
100121635_TGI_at 8.723831
100121636_TGI_at 5.439424
100121637_TGI_at 6.137687
100121638_TGI_at 5.551362

Total number of rows: 52378

Table truncated, full table size 1335 Kbytes.




Supplementary file Size Download File type/resource
GSM1371740__52070900797043031010407111221747_1_1.CEL.gz 5.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap