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Status
Public on Oct 02, 2014
Title
patient BH004, high responder, female, day4, hour 4, recovery
Sample type
RNA
Source name
blood sample from patient BH004, high responder, female, day4, hour 4, recovery
Organism
Homo sapiens Characteristics
patient: BH004
Extracted molecule
total RNA
Extraction protocol
PAXgene protocol was used to extract total RNA
Label
biotin
Label protocol
RT/IVT protocol and reagents provided by Affymetrix
Hybridization protocol
Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol
Affymetrix GeneChip Scanner 3000
Description
blood sample from patient BH004, highresponder, female, day4, hour 4, recovery
Data processing
Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
Submission date
Apr 21, 2014
Last update date
Oct 03, 2014
Contact name
Keith Shockley
Organization name
NIEHS
Street address
111 TW Alexander Drive
City
RTP
State/province
NC
ZIP/Postal code
27709
Country
USA
Platform ID
GPL10379 Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation
Data table header descriptions ID_REF VALUE RMA expression measures from R/affy package
Data table ID_REF VALUE 100121619_TGI_at
6.172713
100121620_TGI_at
7.130129
100121621_TGI_at
5.881991
100121622_TGI_at
7.620574
100121623_TGI_at
8.911561
100121624_TGI_at
7.970797
100121625_TGI_at
8.174816
100121626_TGI_at
4.174701
100121627_TGI_at
4.946373
100121628_TGI_at
4.361763
100121629_TGI_at
9.692326
100121630_TGI_at
5.538791
100121631_TGI_at
4.410877
100121632_TGI_at
8.201675
100121633_TGI_at
9.257737
100121634_TGI_at
3.387071
100121635_TGI_at
8.432883
100121636_TGI_at
5.678986
100121637_TGI_at
6.257422
100121638_TGI_at
6.389392
52378 1335 Kbytes .Supplementary file Size Download File type/resource GSM1371721__52070900797042031010407111221714_1_1.CEL.gz
5.2 Mb
(ftp) (http) CEL
Processed data included within Sample table
