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Status
Public on Oct 02, 2014
Title
patient BH026, high responder, female, day4, hour 0, recovery
Sample type
RNA
Source name
blood sample from patient BH026, high responder, female, day4, hour 0, recovery
Organism
Homo sapiens Characteristics
patient: BH026
Extracted molecule
total RNA
Extraction protocol
PAXgene protocol was used to extract total RNA
Label
biotin
Label protocol
RT/IVT protocol and reagents provided by Affymetrix
Hybridization protocol
Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol
Affymetrix GeneChip Scanner 3000
Description
blood sample from patient BH026, highresponder, female, day4, hour 0, recovery
Data processing
Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
Submission date
Apr 21, 2014
Last update date
Oct 03, 2014
Contact name
Keith Shockley
Organization name
NIEHS
Street address
111 TW Alexander Drive
City
RTP
State/province
NC
ZIP/Postal code
27709
Country
USA
Platform ID
GPL10379 Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation
Data table header descriptions ID_REF VALUE RMA expression measures from R/affy package
Data table ID_REF VALUE 100121619_TGI_at
6.215205
100121620_TGI_at
7.842977
100121621_TGI_at
5.745961
100121622_TGI_at
6.700904
100121623_TGI_at
8.886661
100121624_TGI_at
7.774466
100121625_TGI_at
8.13852
100121626_TGI_at
3.799024
100121627_TGI_at
4.615993
100121628_TGI_at
4.280973
100121629_TGI_at
8.933749
100121630_TGI_at
6.061214
100121631_TGI_at
4.423291
100121632_TGI_at
8.401807
100121633_TGI_at
9.077699
100121634_TGI_at
5.592795
100121635_TGI_at
8.489401
100121636_TGI_at
5.614511
100121637_TGI_at
6.097423
100121638_TGI_at
5.054812
52378 1335 Kbytes .Supplementary file Size Download File type/resource GSM1371700__52070900797042031010407111221689_1_1.CEL.gz
4.6 Mb
(ftp) (http) CEL
Processed data included within Sample table
