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Status
Public on Oct 02, 2014
Title
patient BH026, high responder, female, day3, hour 0, sleepdep
Sample type
RNA
Source name
blood sample from patient BH026, high responder, female, day3, hour 0, sleepdep
Organism
Homo sapiens Characteristics
patient: BH026
Extracted molecule
total RNA
Extraction protocol
PAXgene protocol was used to extract total RNA
Label
biotin
Label protocol
RT/IVT protocol and reagents provided by Affymetrix
Hybridization protocol
Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol
Affymetrix GeneChip Scanner 3000
Description
blood sample from patient BH026, highresponder, female, day3, hour 0, sleepdep
Data processing
Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
Submission date
Apr 21, 2014
Last update date
Oct 03, 2014
Contact name
Keith Shockley
Organization name
NIEHS
Street address
111 TW Alexander Drive
City
RTP
State/province
NC
ZIP/Postal code
27709
Country
USA
Platform ID
GPL10379 Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation
Data table header descriptions ID_REF VALUE RMA expression measures from R/affy package
Data table ID_REF VALUE 100121619_TGI_at
5.958109
100121620_TGI_at
6.976422
100121621_TGI_at
6.507012
100121622_TGI_at
7.685652
100121623_TGI_at
8.923691
100121624_TGI_at
7.779912
100121625_TGI_at
8.329369
100121626_TGI_at
4.310399
100121627_TGI_at
5.740043
100121628_TGI_at
4.06174
100121629_TGI_at
9.497125
100121630_TGI_at
6.019144
100121631_TGI_at
4.222423
100121632_TGI_at
8.115886
100121633_TGI_at
9.09232
100121634_TGI_at
4.187195
100121635_TGI_at
8.369108
100121636_TGI_at
5.62533
100121637_TGI_at
6.259641
100121638_TGI_at
5.224674
52378 1335 Kbytes .Supplementary file Size Download File type/resource GSM1371687__52070900797040031010407111021423_1_1.CEL.gz
4.9 Mb
(ftp) (http) CEL
Processed data included within Sample table
