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Sample GSM1371673 Query DataSets for GSM1371673
Status Public on Oct 02, 2014
Title patient BH020, low responder, male, day2, hour20, baseline
Sample type RNA
 
Source name blood sample from patient BH020, low responder, male, day2, hour20, baseline
Organism Homo sapiens
Characteristics patient: BH020
responder: low
Sex: male
day: 2
hour: 20
biological group: baseline
Extracted molecule total RNA
Extraction protocol PAXgene protocol was used to extract total RNA
Label biotin
Label protocol RT/IVT protocol and reagents provided by Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol Affymetrix GeneChip Scanner 3000
Description blood sample from patient BH020, lowresponder, male, day2, hour20, baseline
Data processing Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
 
Submission date Apr 21, 2014
Last update date Oct 03, 2014
Contact name Keith Shockley
Organization name NIEHS
Street address 111 TW Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL10379
Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation

Data table header descriptions
ID_REF
VALUE RMA expression measures from R/affy package

Data table
ID_REF VALUE
100121619_TGI_at 6.521744
100121620_TGI_at 7.146398
100121621_TGI_at 6.171276
100121622_TGI_at 7.210779
100121623_TGI_at 8.533444
100121624_TGI_at 7.920606
100121625_TGI_at 8.064782
100121626_TGI_at 4.162252
100121627_TGI_at 5.448668
100121628_TGI_at 4.146038
100121629_TGI_at 9.597009
100121630_TGI_at 5.933387
100121631_TGI_at 4.437274
100121632_TGI_at 7.661812
100121633_TGI_at 9.435415
100121634_TGI_at 3.852167
100121635_TGI_at 8.88227
100121636_TGI_at 5.542591
100121637_TGI_at 6.32383
100121638_TGI_at 5.59206

Total number of rows: 52378

Table truncated, full table size 1335 Kbytes.




Supplementary file Size Download File type/resource
GSM1371673__52070900797040031010407111021407_1_1.CEL.gz 5.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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