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Status
Public on Oct 02, 2014
Title
patient BH009, low responder, female, day1, hour 8, baseline
Sample type
RNA
Source name
blood sample from patient BH009, low responder, female, day1, hour 8, baseline
Organism
Homo sapiens Characteristics
patient: BH009
Extracted molecule
total RNA
Extraction protocol
PAXgene protocol was used to extract total RNA
Label
biotin
Label protocol
RT/IVT protocol and reagents provided by Affymetrix
Hybridization protocol
Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol
Affymetrix GeneChip Scanner 3000
Description
blood sample from patient BH009, lowresponder, female, day1, hour 8, baseline
Data processing
Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
Submission date
Apr 21, 2014
Last update date
Oct 03, 2014
Contact name
Keith Shockley
Organization name
NIEHS
Street address
111 TW Alexander Drive
City
RTP
State/province
NC
ZIP/Postal code
27709
Country
USA
Platform ID
GPL10379 Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation
Data table header descriptions ID_REF VALUE RMA expression measures from R/affy package
Data table ID_REF VALUE 100121619_TGI_at
5.304138
100121620_TGI_at
7.361943
100121621_TGI_at
6.188578
100121622_TGI_at
7.3964
100121623_TGI_at
8.910962
100121624_TGI_at
7.052042
100121625_TGI_at
8.322447
100121626_TGI_at
4.302585
100121627_TGI_at
5.983163
100121628_TGI_at
3.988129
100121629_TGI_at
9.527026
100121630_TGI_at
5.945273
100121631_TGI_at
4.813726
100121632_TGI_at
8.044118
100121633_TGI_at
9.394848
100121634_TGI_at
4.95971
100121635_TGI_at
8.371566
100121636_TGI_at
5.417703
100121637_TGI_at
6.442146
100121638_TGI_at
5.722135
52378 1335 Kbytes .Supplementary file Size Download File type/resource GSM1371670__52070900797040031010407111021402_1_1.CEL.gz
4.8 Mb
(ftp) (http) CEL
Processed data included within Sample table
