NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1371620 Query DataSets for GSM1371620
Status Public on Oct 02, 2014
Title patient BH014, low responder, male, day3, hour 8, sleepdep
Sample type RNA
 
Source name blood sample from patient BH014, low responder, male, day3, hour 8, sleepdep
Organism Homo sapiens
Characteristics patient: BH014
responder: low
Sex: male
day: 3
hour: 8
biological group: sleep deprivation
Extracted molecule total RNA
Extraction protocol PAXgene protocol was used to extract total RNA
Label biotin
Label protocol RT/IVT protocol and reagents provided by Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol Affymetrix GeneChip Scanner 3000
Description blood sample from patient BH014, lowresponder, male, day3, hour 8, sleepdep
Data processing Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
 
Submission date Apr 21, 2014
Last update date Oct 03, 2014
Contact name Keith Shockley
Organization name NIEHS
Street address 111 TW Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL10379
Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation

Data table header descriptions
ID_REF
VALUE RMA expression measures from R/affy package

Data table
ID_REF VALUE
100121619_TGI_at 6.259043
100121620_TGI_at 7.765579
100121621_TGI_at 5.976943
100121622_TGI_at 6.597689
100121623_TGI_at 9.012168
100121624_TGI_at 7.186498
100121625_TGI_at 7.949841
100121626_TGI_at 4.043154
100121627_TGI_at 5.29759
100121628_TGI_at 4.003261
100121629_TGI_at 9.75423
100121630_TGI_at 5.305907
100121631_TGI_at 4.446581
100121632_TGI_at 7.683012
100121633_TGI_at 9.122448
100121634_TGI_at 4.444754
100121635_TGI_at 8.155934
100121636_TGI_at 5.688639
100121637_TGI_at 5.933746
100121638_TGI_at 5.587658

Total number of rows: 52378

Table truncated, full table size 1335 Kbytes.




Supplementary file Size Download File type/resource
GSM1371620__52070900797037031010407111021208_1_1.CEL.gz 5.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap