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Sample GSM1371606 Query DataSets for GSM1371606
Status Public on Oct 02, 2014
Title patient BH005, high responder, female, day3, hour16, sleepdep
Sample type RNA
 
Source name blood sample from patient BH005, high responder, female, day3, hour16, sleepdep
Organism Homo sapiens
Characteristics patient: BH005
responder: high
Sex: female
day: 3
hour: 16
biological group: sleep deprivation
Extracted molecule total RNA
Extraction protocol PAXgene protocol was used to extract total RNA
Label biotin
Label protocol RT/IVT protocol and reagents provided by Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 18 hr at 45C. GeneChips were washed and stained in the Affymetrix
Scan protocol Affymetrix GeneChip Scanner 3000
Description blood sample from patient BH005, highresponder, female, day3, hour16, sleepdep
Data processing Data were processed using R/affy software. In brief, the RMA method adjusts the background of perfect match (PM) probes, applies a quantile normalization of the corrected PM values, and calculates final expression measures with the Tukey median polish algorithm.
 
Submission date Apr 21, 2014
Last update date Oct 03, 2014
Contact name Keith Shockley
Organization name NIEHS
Street address 111 TW Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL10379
Series (1)
GSE56931 Blood gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation

Data table header descriptions
ID_REF
VALUE RMA expression measures from R/affy package

Data table
ID_REF VALUE
100121619_TGI_at 5.951925
100121620_TGI_at 7.470448
100121621_TGI_at 7.060711
100121622_TGI_at 7.755126
100121623_TGI_at 9.061539
100121624_TGI_at 7.413119
100121625_TGI_at 8.150938
100121626_TGI_at 4.209564
100121627_TGI_at 5.313945
100121628_TGI_at 4.339858
100121629_TGI_at 9.750747
100121630_TGI_at 6.57902
100121631_TGI_at 4.518171
100121632_TGI_at 7.73927
100121633_TGI_at 8.969656
100121634_TGI_at 3.666797
100121635_TGI_at 8.304966
100121636_TGI_at 5.571681
100121637_TGI_at 6.352946
100121638_TGI_at 5.631777

Total number of rows: 52378

Table truncated, full table size 1335 Kbytes.




Supplementary file Size Download File type/resource
GSM1371606__52070900797015030910407110619062_1_1.CEL.gz 5.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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