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Sample GSM136655 Query DataSets for GSM136655
Status Public on Jan 31, 2008
Title 045_10_06
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1326 P 0.000127
AFFX-BioB-M_at 1989.6 P 0.000044
AFFX-BioB-3_at 1176 P 0.000044
AFFX-BioC-5_at 3368.7 P 0.000044
AFFX-BioC-3_at 4044.6 P 0.000044
AFFX-BioDn-5_at 8507.1 P 0.000044
AFFX-BioDn-3_at 17230.5 P 0.000052
AFFX-CreX-5_at 46739.5 P 0.000044
AFFX-CreX-3_at 53500.3 P 0.000044
AFFX-DapX-5_at 27.3 A 0.313723
AFFX-DapX-M_at 15.6 A 0.645572
AFFX-DapX-3_at 9.1 A 0.868639
AFFX-LysX-5_at 2.4 A 0.953518
AFFX-LysX-M_at 8.2 A 0.760937
AFFX-LysX-3_at 3.8 A 0.724854
AFFX-PheX-5_at 9.9 A 0.631562
AFFX-PheX-M_at 4.4 A 0.81489
AFFX-PheX-3_at 16.4 A 0.617401
AFFX-ThrX-5_at 52.2 A 0.48511
AFFX-ThrX-M_at 21.9 A 0.544587

Total number of rows: 22277

Table truncated, full table size 601 Kbytes.

Supplementary file Size Download File type/resource
GSM136655.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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