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Sample GSM136653 Query DataSets for GSM136653
Status Public on Jan 31, 2008
Title 045_10_04
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1215.3 P 0.000258
AFFX-BioB-M_at 2054.8 P 0.000052
AFFX-BioB-3_at 1240.9 P 0.000044
AFFX-BioC-5_at 3178.2 P 0.000044
AFFX-BioC-3_at 3737.6 P 0.000052
AFFX-BioDn-5_at 8642.9 P 0.000044
AFFX-BioDn-3_at 16223.7 P 0.000052
AFFX-CreX-5_at 44275.5 P 0.000052
AFFX-CreX-3_at 51765.2 P 0.000044
AFFX-DapX-5_at 46.9 A 0.368438
AFFX-DapX-M_at 11.3 A 0.588627
AFFX-DapX-3_at 32.3 A 0.617401
AFFX-LysX-5_at 27.1 A 0.287743
AFFX-LysX-M_at 12.2 A 0.686277
AFFX-LysX-3_at 6.4 A 0.868639
AFFX-PheX-5_at 6.7 A 0.834139
AFFX-PheX-M_at 25.6 A 0.368438
AFFX-PheX-3_at 23.4 A 0.440646
AFFX-ThrX-5_at 41.3 A 0.354453
AFFX-ThrX-M_at 27.3 A 0.48511

Total number of rows: 22277

Table truncated, full table size 601 Kbytes.

Supplementary file Size Download File type/resource
GSM136653.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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