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Sample GSM136651 Query DataSets for GSM136651
Status Public on Jan 31, 2008
Title 045_10_02
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1053.1 P 0.000195
AFFX-BioB-M_at 1771.5 P 0.000044
AFFX-BioB-3_at 1055.1 P 0.000044
AFFX-BioC-5_at 2834.6 P 0.000044
AFFX-BioC-3_at 3292 P 0.000044
AFFX-BioDn-5_at 7323.4 P 0.000044
AFFX-BioDn-3_at 12337.4 P 0.000044
AFFX-CreX-5_at 37359 P 0.000052
AFFX-CreX-3_at 45354.5 P 0.000044
AFFX-DapX-5_at 3.8 A 0.86866
AFFX-DapX-M_at 13 A 0.699394
AFFX-DapX-3_at 2 A 0.995002
AFFX-LysX-5_at 31.8 M 0.062929
AFFX-LysX-M_at 26.8 A 0.617401
AFFX-LysX-3_at 40.3 A 0.185131
AFFX-PheX-5_at 13.1 A 0.617401
AFFX-PheX-M_at 2.3 A 0.927318
AFFX-PheX-3_at 62.2 A 0.123572
AFFX-ThrX-5_at 4.6 A 0.749204
AFFX-ThrX-M_at 1.5 A 0.976081

Total number of rows: 22277

Table truncated, full table size 600 Kbytes.

Supplementary file Size Download File type/resource
GSM136651.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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