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Sample GSM136646 Query DataSets for GSM136646
Status Public on Jan 31, 2008
Title 045_09_04
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 978.4 P 0.000662
AFFX-BioB-M_at 2335.5 P 0.000044
AFFX-BioB-3_at 1329.8 P 0.000044
AFFX-BioC-5_at 2979.8 P 0.000044
AFFX-BioC-3_at 3660.7 P 0.000044
AFFX-BioDn-5_at 7805.1 P 0.000044
AFFX-BioDn-3_at 16694.5 P 0.000052
AFFX-CreX-5_at 45133.1 P 0.000044
AFFX-CreX-3_at 52200.2 P 0.000044
AFFX-DapX-5_at 13.8 A 0.603089
AFFX-DapX-M_at 16.2 A 0.760937
AFFX-DapX-3_at 42.8 A 0.60308
AFFX-LysX-5_at 30.8 A 0.195246
AFFX-LysX-M_at 24.1 A 0.724854
AFFX-LysX-3_at 57.3 A 0.083574
AFFX-PheX-5_at 4.1 A 0.963456
AFFX-PheX-M_at 3.3 A 0.945787
AFFX-PheX-3_at 110.8 A 0.139482
AFFX-ThrX-5_at 4.7 A 0.969035
AFFX-ThrX-M_at 22.9 A 0.699394

Total number of rows: 22277

Table truncated, full table size 600 Kbytes.

Supplementary file Size Download File type/resource
GSM136646.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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