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Sample GSM136645 Query DataSets for GSM136645
Status Public on Jan 31, 2008
Title 045_09_03
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Abdomen
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 2355.9 P 0.000169
AFFX-BioB-M_at 3722.2 P 0.000044
AFFX-BioB-3_at 2564.5 P 0.000044
AFFX-BioC-5_at 5929.2 P 0.000044
AFFX-BioC-3_at 6616.2 P 0.000044
AFFX-BioDn-5_at 14584 P 0.000044
AFFX-BioDn-3_at 25608.8 P 0.000044
AFFX-CreX-5_at 75771.9 P 0.000052
AFFX-CreX-3_at 79903.1 P 0.000044
AFFX-DapX-5_at 57.3 A 0.13134
AFFX-DapX-M_at 67.3 A 0.239044
AFFX-DapX-3_at 6.5 A 0.921998
AFFX-LysX-5_at 3.7 A 0.953518
AFFX-LysX-M_at 22 A 0.659339
AFFX-LysX-3_at 10.7 A 0.39692
AFFX-PheX-5_at 21.4 A 0.760937
AFFX-PheX-M_at 2.2 A 0.979978
AFFX-PheX-3_at 61.9 A 0.5
AFFX-ThrX-5_at 55.7 A 0.440646
AFFX-ThrX-M_at 31.7 A 0.51489

Total number of rows: 22277

Table truncated, full table size 602 Kbytes.

Supplementary file Size Download File type/resource
GSM136645.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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