GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136644 Query DataSets for GSM136644
Status Public on Jan 31, 2008
Title 045_09_01
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1152.6 P 0.00039
AFFX-BioB-M_at 2532.2 P 0.000044
AFFX-BioB-3_at 1450.6 P 0.000044
AFFX-BioC-5_at 3616.6 P 0.000044
AFFX-BioC-3_at 4119.7 P 0.000044
AFFX-BioDn-5_at 8434.4 P 0.000044
AFFX-BioDn-3_at 17532.6 P 0.000052
AFFX-CreX-5_at 46424.7 P 0.000044
AFFX-CreX-3_at 51036.3 P 0.000044
AFFX-DapX-5_at 33.4 A 0.227636
AFFX-DapX-M_at 79.5 A 0.216524
AFFX-DapX-3_at 54.5 A 0.300606
AFFX-LysX-5_at 22.1 A 0.58862
AFFX-LysX-M_at 49.4 A 0.195266
AFFX-LysX-3_at 9.5 A 0.699394
AFFX-PheX-5_at 5.4 A 0.440626
AFFX-PheX-M_at 2.6 A 0.91056
AFFX-PheX-3_at 55.4 A 0.425962
AFFX-ThrX-5_at 6.3 A 0.712257
AFFX-ThrX-M_at 5.4 A 0.932339

Total number of rows: 22277

Table truncated, full table size 601 Kbytes.

Supplementary file Size Download File type/resource
GSM136644.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap