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Sample GSM136642 Query DataSets for GSM136642
Status Public on Jan 31, 2008
Title 045_08_09
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1793.1 P 0.000169
AFFX-BioB-M_at 3552.6 P 0.000044
AFFX-BioB-3_at 2154.9 P 0.000044
AFFX-BioC-5_at 4658.9 P 0.000044
AFFX-BioC-3_at 6594.5 P 0.000044
AFFX-BioDn-5_at 13114.9 P 0.000044
AFFX-BioDn-3_at 24474.8 P 0.000052
AFFX-CreX-5_at 65543.8 P 0.000052
AFFX-CreX-3_at 83063.5 P 0.000044
AFFX-DapX-5_at 37 A 0.470241
AFFX-DapX-M_at 19.4 A 0.783476
AFFX-DapX-3_at 7.9 A 0.973889
AFFX-LysX-5_at 42.1 A 0.455409
AFFX-LysX-M_at 50 A 0.340661
AFFX-LysX-3_at 35.2 A 0.455413
AFFX-PheX-5_at 4.6 A 0.860518
AFFX-PheX-M_at 2.8 A 0.99156
AFFX-PheX-3_at 64.8 A 0.368438
AFFX-ThrX-5_at 7.1 A 0.969024
AFFX-ThrX-M_at 8.8 A 0.852061

Total number of rows: 22277

Table truncated, full table size 600 Kbytes.

Supplementary file Size Download File type/resource
GSM136642.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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