GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136640 Query DataSets for GSM136640
Status Public on Jan 31, 2008
Title 045_08_07
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1361.2 P 0.000195
AFFX-BioB-M_at 2437.1 P 0.000044
AFFX-BioB-3_at 1452.9 P 0.000052
AFFX-BioC-5_at 3491.3 P 0.000052
AFFX-BioC-3_at 4318.4 P 0.000044
AFFX-BioDn-5_at 9133.1 P 0.000044
AFFX-BioDn-3_at 19509.9 P 0.000052
AFFX-CreX-5_at 49407.8 P 0.000052
AFFX-CreX-3_at 57676.3 P 0.000044
AFFX-DapX-5_at 20.2 A 0.470235
AFFX-DapX-M_at 32.4 A 0.617401
AFFX-DapX-3_at 57.7 A 0.195266
AFFX-LysX-5_at 53 A 0.165861
AFFX-LysX-M_at 7.4 A 0.712257
AFFX-LysX-3_at 39.1 A 0.083592
AFFX-PheX-5_at 8 A 0.814869
AFFX-PheX-M_at 4.7 A 0.932322
AFFX-PheX-3_at 43.3 A 0.41138
AFFX-ThrX-5_at 32.8 A 0.470241
AFFX-ThrX-M_at 3.7 A 0.910541

Total number of rows: 22277

Table truncated, full table size 602 Kbytes.

Supplementary file Size Download File type/resource
GSM136640.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap