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Sample GSM136639 Query DataSets for GSM136639
Status Public on Jan 31, 2008
Title 045_08_04
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Scalp
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1577.5 P 0.000258
AFFX-BioB-M_at 2064.7 P 0.000044
AFFX-BioB-3_at 1520.3 P 0.00007
AFFX-BioC-5_at 3859.6 P 0.000052
AFFX-BioC-3_at 5036.3 P 0.000044
AFFX-BioDn-5_at 10022.8 P 0.000044
AFFX-BioDn-3_at 21639.4 P 0.00006
AFFX-CreX-5_at 55356.8 P 0.000052
AFFX-CreX-3_at 63315.3 P 0.000044
AFFX-DapX-5_at 42.7 P 0.026111
AFFX-DapX-M_at 58.3 A 0.175328
AFFX-DapX-3_at 29.6 A 0.794268
AFFX-LysX-5_at 32.9 A 0.41138
AFFX-LysX-M_at 9 A 0.868639
AFFX-LysX-3_at 40.7 A 0.147939
AFFX-PheX-5_at 10.2 A 0.631562
AFFX-PheX-M_at 9.7 A 0.794288
AFFX-PheX-3_at 67.9 A 0.327079
AFFX-ThrX-5_at 15.6 A 0.737173
AFFX-ThrX-M_at 2.9 A 0.971554

Total number of rows: 22277

Table truncated, full table size 602 Kbytes.

Supplementary file Size Download File type/resource
GSM136639.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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