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Sample GSM136636 Query DataSets for GSM136636
Status Public on Jan 31, 2008
Title 045_08_01
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1637.3 P 0.000446
AFFX-BioB-M_at 2606.7 P 0.000044
AFFX-BioB-3_at 1694 P 0.000044
AFFX-BioC-5_at 3838.7 P 0.000044
AFFX-BioC-3_at 4681.3 P 0.000044
AFFX-BioDn-5_at 9210 P 0.000044
AFFX-BioDn-3_at 21372.5 P 0.00006
AFFX-CreX-5_at 60789.7 P 0.000044
AFFX-CreX-3_at 68552.5 P 0.000044
AFFX-DapX-5_at 11.5 A 0.686337
AFFX-DapX-M_at 26.8 A 0.645559
AFFX-DapX-3_at 61.6 A 0.396911
AFFX-LysX-5_at 23.7 A 0.749223
AFFX-LysX-M_at 18.1 A 0.470238
AFFX-LysX-3_at 13.5 A 0.58862
AFFX-PheX-5_at 4 A 0.794268
AFFX-PheX-M_at 9 A 0.794349
AFFX-PheX-3_at 37 A 0.804734
AFFX-ThrX-5_at 5.5 A 0.960352
AFFX-ThrX-M_at 23.4 A 0.760937

Total number of rows: 22277

Table truncated, full table size 601 Kbytes.

Supplementary file Size Download File type/resource
GSM136636.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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