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Sample GSM136633 Query DataSets for GSM136633
Status Public on Jan 31, 2008
Title 045_07_06
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Cervical-Neck node
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1277.8 P 0.000581
AFFX-BioB-M_at 1751 P 0.000044
AFFX-BioB-3_at 1155.1 P 0.00007
AFFX-BioC-5_at 3007.5 P 0.000044
AFFX-BioC-3_at 3715.8 P 0.000044
AFFX-BioDn-5_at 7912.8 P 0.000044
AFFX-BioDn-3_at 16682 P 0.00007
AFFX-CreX-5_at 42675 P 0.000052
AFFX-CreX-3_at 49942.4 P 0.000044
AFFX-DapX-5_at 3.5 A 0.724854
AFFX-DapX-M_at 31.1 A 0.60308
AFFX-DapX-3_at 24.7 A 0.631618
AFFX-LysX-5_at 26.9 A 0.354453
AFFX-LysX-M_at 4 A 0.949771
AFFX-LysX-3_at 39.5 A 0.205732
AFFX-PheX-5_at 3.4 A 0.804734
AFFX-PheX-M_at 19.5 A 0.724854
AFFX-PheX-3_at 36.9 A 0.382599
AFFX-ThrX-5_at 4.7 A 0.794268
AFFX-ThrX-M_at 33.1 A 0.287743

Total number of rows: 22277

Table truncated, full table size 602 Kbytes.

Supplementary file Size Download File type/resource
GSM136633.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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