GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136631 Query DataSets for GSM136631
Status Public on Jan 31, 2008
Title 045_07_03
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1496.9 P 0.00034
AFFX-BioB-M_at 2240.4 P 0.000044
AFFX-BioB-3_at 1503.7 P 0.000052
AFFX-BioC-5_at 3931.6 P 0.000052
AFFX-BioC-3_at 5122.3 P 0.000044
AFFX-BioDn-5_at 10287.5 P 0.000044
AFFX-BioDn-3_at 21743.5 P 0.000052
AFFX-CreX-5_at 51766.2 P 0.000052
AFFX-CreX-3_at 66484.5 P 0.000044
AFFX-DapX-5_at 4.9 A 0.852061
AFFX-DapX-M_at 5.6 A 0.969024
AFFX-DapX-3_at 11.4 A 0.737191
AFFX-LysX-5_at 80.7 P 0.015183
AFFX-LysX-M_at 8.3 A 0.86868
AFFX-LysX-3_at 41.8 A 0.354453
AFFX-PheX-5_at 5.5 A 0.783476
AFFX-PheX-M_at 8.7 A 0.645547
AFFX-PheX-3_at 42.3 A 0.425962
AFFX-ThrX-5_at 68.5 A 0.205732
AFFX-ThrX-M_at 25 A 0.440646

Total number of rows: 22277

Table truncated, full table size 600 Kbytes.

Supplementary file Size Download File type/resource
GSM136631.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap