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Sample GSM136602 Query DataSets for GSM136602
Status Public on Jan 31, 2008
Title 045_03_08
Sample type RNA
 
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
 
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS 1.1.1.052
 
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
E-mail(s) shirin.ford@bms.com
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
 
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1244 P 0.000662
AFFX-BioB-M_at 1886.1 P 0.000044
AFFX-BioB-3_at 1191.3 P 0.00006
AFFX-BioC-5_at 2936.9 P 0.000052
AFFX-BioC-3_at 3927.9 P 0.000044
AFFX-BioDn-5_at 8404.7 P 0.000044
AFFX-BioDn-3_at 18497.8 P 0.00007
AFFX-CreX-5_at 48749.7 P 0.000052
AFFX-CreX-3_at 61732.1 P 0.000044
AFFX-DapX-5_at 37.5 A 0.139399
AFFX-DapX-M_at 15.3 A 0.617401
AFFX-DapX-3_at 11.8 A 0.868639
AFFX-LysX-5_at 15.2 A 0.455413
AFFX-LysX-M_at 20.2 A 0.672921
AFFX-LysX-3_at 26.4 A 0.559354
AFFX-PheX-5_at 11 A 0.440646
AFFX-PheX-M_at 4.2 A 0.937104
AFFX-PheX-3_at 56 A 0.095667
AFFX-ThrX-5_at 23.7 A 0.58862
AFFX-ThrX-M_at 10.3 A 0.783476

Total number of rows: 22277

Table truncated, full table size 602 Kbytes.




Supplementary file Size Download File type/resource
GSM136602.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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