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Sample GSM136601 Query DataSets for GSM136601
Status Public on Jan 31, 2008
Title 045_03_06
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Colon
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1739.1 P 0.000446
AFFX-BioB-M_at 2212.4 P 0.000044
AFFX-BioB-3_at 1112.7 P 0.000195
AFFX-BioC-5_at 3453.8 P 0.000044
AFFX-BioC-3_at 4152.3 P 0.000044
AFFX-BioDn-5_at 8477.6 P 0.000044
AFFX-BioDn-3_at 22164.8 P 0.00007
AFFX-CreX-5_at 53251.4 P 0.000044
AFFX-CreX-3_at 62980.2 P 0.000044
AFFX-DapX-5_at 22.1 A 0.5
AFFX-DapX-M_at 35.8 A 0.631562
AFFX-DapX-3_at 49 A 0.544587
AFFX-LysX-5_at 58.4 A 0.195266
AFFX-LysX-M_at 14.9 A 0.5
AFFX-LysX-3_at 3.6 A 0.672921
AFFX-PheX-5_at 11.8 A 0.52976
AFFX-PheX-M_at 3.4 A 0.998591
AFFX-PheX-3_at 74.6 A 0.48511
AFFX-ThrX-5_at 12.3 A 0.804734
AFFX-ThrX-M_at 22.1 A 0.559354

Total number of rows: 22277

Table truncated, full table size 603 Kbytes.

Supplementary file Size Download File type/resource
GSM136601.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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