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Sample GSM136600 Query DataSets for GSM136600
Status Public on Jan 31, 2008
Title 045_03_05
Sample type RNA
 
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
 
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS 1.1.1.052
 
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
E-mail(s) shirin.ford@bms.com
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
 
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1423.8 P 0.000195
AFFX-BioB-M_at 2140.8 P 0.000044
AFFX-BioB-3_at 1332.6 P 0.00006
AFFX-BioC-5_at 3559 P 0.000052
AFFX-BioC-3_at 4573.6 P 0.000052
AFFX-BioDn-5_at 9110 P 0.000044
AFFX-BioDn-3_at 18842.6 P 0.00006
AFFX-CreX-5_at 50286.9 P 0.000052
AFFX-CreX-3_at 55988.2 P 0.000044
AFFX-DapX-5_at 25.4 A 0.354453
AFFX-DapX-M_at 40 A 0.470235
AFFX-DapX-3_at 50.3 A 0.102165
AFFX-LysX-5_at 27.7 M 0.062929
AFFX-LysX-M_at 10.1 A 0.783476
AFFX-LysX-3_at 6 A 0.354441
AFFX-PheX-5_at 4.3 A 0.860538
AFFX-PheX-M_at 1.7 A 0.99156
AFFX-PheX-3_at 104.3 A 0.139482
AFFX-ThrX-5_at 32.8 A 0.287743
AFFX-ThrX-M_at 5.6 A 0.891021

Total number of rows: 22277

Table truncated, full table size 601 Kbytes.




Supplementary file Size Download File type/resource
GSM136600.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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