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Sample GSM1365916 Query DataSets for GSM1365916
Status Public on Apr 07, 2015
Title Ovarian cancer cell TGF-beta treated 120+48 hours (rep2)
Sample type genomic
Source name cell line
Organism Homo sapiens
Characteristics cell line: SKOV3
cell type: ovarian cancer
treatment: TGF-beta 120+48H
Treatment protocol Cells were treated with TGF-beta at the dose of 5 ng/ml.
Growth protocol Cells were maintained in medium DMGM.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from cells using Qiagen QiaAMP kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Infinium HD Methylation Assay Protocol
Hybridization protocol DNA was amplified, fragmented, and hybridized to Illumina Infinium HumanMethylation450 BeadChip using standard Infinium HD Methylation Assay protocol.
Scan protocol Arrays were imaged with HiScan Reader using recommended Illumina scanner settings.
Description Ovarian cancer cells stimulated with TGF-beta for 120 hours then 48 hours off.
Data processing GenomeStudio v2011.2 with Methylation module v1.8.5
Unmethylated and methylated signal intensities
Submission date Apr 08, 2014
Last update date Apr 07, 2015
Contact name Horacio Cardenas
Phone 317-274-7305
Organization name Indiana University
Street address 980 West Walnut Street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL13534
Series (1)
GSE56621 TGF-beta stimulation in ovarian cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.73926
cg00000108 0.89925
cg00000109 0.86603
cg00000165 0.60372
cg00000236 0.82642
cg00000289 0.72267
cg00000292 0.91822
cg00000321 0.80281
cg00000363 0.89719
cg00000622 0.02405
cg00000658 0.79639
cg00000714 0.42576
cg00000721 0.88764
cg00000734 0.21272
cg00000769 0.10473
cg00000807 0.88916
cg00000884 0.76720
cg00000905 0.15279
cg00000924 0.50476
cg00000948 0.78440

Total number of rows: 485577

Table truncated, full table size 9018 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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