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Sample GSM1365913 Query DataSets for GSM1365913
Status Public on Apr 07, 2015
Title Ovarian cancer cell TGF-beta treated 120 hours (rep2)
Sample type genomic
Source name cell line
Organism Homo sapiens
Characteristics cell line: SKOV3
cell type: ovarian cancer
treatment: TGF-beta 120H
Treatment protocol Cells were treated with TGF-beta at the dose of 5 ng/ml.
Growth protocol Cells were maintained in medium DMGM.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from cells using Qiagen QiaAMP kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Infinium HD Methylation Assay Protocol
Hybridization protocol DNA was amplified, fragmented, and hybridized to Illumina Infinium HumanMethylation450 BeadChip using standard Infinium HD Methylation Assay protocol.
Scan protocol Arrays were imaged with HiScan Reader using recommended Illumina scanner settings.
Description Ovarian cancer cells stimulated with TGF-beta for 120 hours.
Data processing GenomeStudio v2011.2 with Methylation module v1.8.5
Unmethylated and methylated signal intensities
Submission date Apr 08, 2014
Last update date Apr 07, 2015
Contact name Horacio Cardenas
Phone 317-274-7305
Organization name Indiana University
Street address 980 West Walnut Street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL13534
Series (1)
GSE56621 TGF-beta stimulation in ovarian cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.79845
cg00000108 0.91182
cg00000109 0.81487
cg00000165 0.66791
cg00000236 0.86509
cg00000289 0.68506
cg00000292 0.91191
cg00000321 0.79436
cg00000363 0.89731
cg00000622 0.02904
cg00000658 0.82528
cg00000714 0.40242
cg00000721 0.89139
cg00000734 0.24448
cg00000769 0.10386
cg00000807 0.87869
cg00000884 0.77358
cg00000905 0.12903
cg00000924 0.51139
cg00000948 0.79815

Total number of rows: 485577

Table truncated, full table size 9019 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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