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Sample GSM1365912 Query DataSets for GSM1365912
Status Public on Apr 07, 2015
Title Ovarian cancer cell TGF-beta treated 120 hours (rep1)
Sample type genomic
Source name cell line
Organism Homo sapiens
Characteristics cell line: SKOV3
cell type: ovarian cancer
treatment: TGF-beta 120H
Treatment protocol Cells were treated with TGF-beta at the dose of 5 ng/ml.
Growth protocol Cells were maintained in medium DMGM.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from cells using Qiagen QiaAMP kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Infinium HD Methylation Assay Protocol
Hybridization protocol DNA was amplified, fragmented, and hybridized to Illumina Infinium HumanMethylation450 BeadChip using standard Infinium HD Methylation Assay protocol.
Scan protocol Arrays were imaged with HiScan Reader using recommended Illumina scanner settings.
Description Ovarian cancer cells stimulated with TGF-beta for 120 hours.
Data processing GenomeStudio v2011.2 with Methylation module v1.8.5
Unmethylated and methylated signal intensities
Submission date Apr 08, 2014
Last update date Apr 07, 2015
Contact name Horacio Cardenas
Phone 317-274-7305
Organization name Indiana University
Street address 980 West Walnut Street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL13534
Series (1)
GSE56621 TGF-beta stimulation in ovarian cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.78329
cg00000108 0.90216
cg00000109 0.84760
cg00000165 0.68508
cg00000236 0.85827
cg00000289 0.76234
cg00000292 0.90205
cg00000321 0.81969
cg00000363 0.90535
cg00000622 0.02456
cg00000658 0.79014
cg00000714 0.41171
cg00000721 0.89225
cg00000734 0.19735
cg00000769 0.09862
cg00000807 0.89942
cg00000884 0.78832
cg00000905 0.15900
cg00000924 0.54833
cg00000948 0.79349

Total number of rows: 485577

Table truncated, full table size 9019 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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