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Sample GSM1365910 Query DataSets for GSM1365910
Status Public on Apr 07, 2015
Title Ovarian cancer cell TGF-beta treated 48 hours (rep2)
Sample type genomic
Source name cell line
Organism Homo sapiens
Characteristics cell line: SKOV3
cell type: ovarian cancer
treatment: TGF-beta 48H
Treatment protocol Cells were treated with TGF-beta at the dose of 5 ng/ml.
Growth protocol Cells were maintained in medium DMGM.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from cells using Qiagen QiaAMP kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Infinium HD Methylation Assay Protocol
Hybridization protocol DNA was amplified, fragmented, and hybridized to Illumina Infinium HumanMethylation450 BeadChip using standard Infinium HD Methylation Assay protocol.
Scan protocol Arrays were imaged with HiScan Reader using recommended Illumina scanner settings.
Description Ovarian cancer cells stimulated with TGF-beta for 48 hours.
Data processing GenomeStudio v2011.2 with Methylation module v1.8.5
Unmethylated and methylated signal intensities
Submission date Apr 08, 2014
Last update date Apr 07, 2015
Contact name Horacio Cardenas
Phone 317-274-7305
Organization name Indiana University
Street address 980 West Walnut Street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL13534
Series (1)
GSE56621 TGF-beta stimulation in ovarian cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.80046
cg00000108 0.92323
cg00000109 0.85419
cg00000165 0.67593
cg00000236 0.88400
cg00000289 0.69327
cg00000292 0.89465
cg00000321 0.81042
cg00000363 0.91311
cg00000622 0.02507
cg00000658 0.80095
cg00000714 0.39037
cg00000721 0.91282
cg00000734 0.11654
cg00000769 0.07643
cg00000807 0.88636
cg00000884 0.79833
cg00000905 0.13729
cg00000924 0.52083
cg00000948 0.75874

Total number of rows: 485577

Table truncated, full table size 9019 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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