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Sample GSM1365909 Query DataSets for GSM1365909
Status Public on Apr 07, 2015
Title Ovarian cancer cell TGF-beta treated 48 hours (rep1)
Sample type genomic
Source name cell line
Organism Homo sapiens
Characteristics cell line: SKOV3
cell type: ovarian cancer
treatment: TGF-beta 48H
Treatment protocol Cells were treated with TGF-beta at the dose of 5 ng/ml.
Growth protocol Cells were maintained in medium DMGM.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from cells using Qiagen QiaAMP kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Infinium HD Methylation Assay Protocol
Hybridization protocol DNA was amplified, fragmented, and hybridized to Illumina Infinium HumanMethylation450 BeadChip using standard Infinium HD Methylation Assay protocol.
Scan protocol Arrays were imaged with HiScan Reader using recommended Illumina scanner settings.
Description Ovarian cancer cells stimulated with TGF-beta for 48 hours.
Data processing GenomeStudio v2011.2 with Methylation module v1.8.5
Unmethylated and methylated signal intensities
Submission date Apr 08, 2014
Last update date Apr 07, 2015
Contact name Horacio Cardenas
Phone 317-274-7305
Organization name Indiana University
Street address 980 West Walnut Street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL13534
Series (1)
GSE56621 TGF-beta stimulation in ovarian cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.77392
cg00000108 0.90517
cg00000109 0.87699
cg00000165 0.67464
cg00000236 0.86968
cg00000289 0.74279
cg00000292 0.91128
cg00000321 0.81397
cg00000363 0.91388
cg00000622 0.02562
cg00000658 0.81217
cg00000714 0.42582
cg00000721 0.89340
cg00000734 0.18796
cg00000769 0.08286
cg00000807 0.89111
cg00000884 0.79199
cg00000905 0.19322
cg00000924 0.55155
cg00000948 0.79246

Total number of rows: 485577

Table truncated, full table size 9018 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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