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Sample GSM1365908 Query DataSets for GSM1365908
Status Public on Apr 07, 2015
Title Ovarian cancer cell control (rep3)
Sample type genomic
Source name cell line
Organism Homo sapiens
Characteristics cell line: SKOV3
cell type: ovarian cancer
treatment: control
Treatment protocol Cells were treated with TGF-beta at the dose of 5 ng/ml.
Growth protocol Cells were maintained in medium DMGM.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from cells using Qiagen QiaAMP kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Infinium HD Methylation Assay Protocol
Hybridization protocol DNA was amplified, fragmented, and hybridized to Illumina Infinium HumanMethylation450 BeadChip using standard Infinium HD Methylation Assay protocol.
Scan protocol Arrays were imaged with HiScan Reader using recommended Illumina scanner settings.
Description Ovarian cancer cells without TGF-beta stimulation used as control.
Data processing GenomeStudio v2011.2 with Methylation module v1.8.5
Unmethylated and methylated signal intensities
Submission date Apr 08, 2014
Last update date Apr 07, 2015
Contact name Horacio Cardenas
Phone 317-274-7305
Organization name Indiana University
Street address 980 West Walnut Street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL13534
Series (1)
GSE56621 TGF-beta stimulation in ovarian cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.74290
cg00000108 0.90536
cg00000109 0.85224
cg00000165 0.67057
cg00000236 0.84745
cg00000289 0.72603
cg00000292 0.89317
cg00000321 0.82459
cg00000363 0.90444
cg00000622 0.02728
cg00000658 0.77566
cg00000714 0.40401
cg00000721 0.87311
cg00000734 0.16519
cg00000769 0.08088
cg00000807 0.88158
cg00000884 0.76219
cg00000905 0.17027
cg00000924 0.53943
cg00000948 0.78087

Total number of rows: 485577

Table truncated, full table size 9009 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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